Rain will not be a problem. The Japs have been making r/a assisted skoots since the first 1990 ZX11. I personally have owned SIX r/a skoots amassing about 200,000 miles. Been in torrential down pours where I thought I was gonna die and the only occurrence of rain getting into the engine was a very slight miss. The H2O goes in and out the exhaust, the filter gets wet but also gets dried out too!
There are a few reasons for the snorkel . The restrictive design does a few things. It alters intake"noise" which must be suppressed to an extent to make the skoot meet noise standards as sound measuring meters measure sound and some type and level of intake noise suppression has been incorporated for years in most skoots..
Second and more importantly is that snorkel INCREASES the velocity of the air entering the frame, which is a HUGE plenum chamber.so It helps to straighten out air flow reducing turbulence and a creating more laminar air flow, which makes more power.
I made a forward facing fresh air intake of my own design for my Chieftain and as you found how dirty ur filter was, I can attest the effectiveness of a forward facing intake, and I always see the same on r/a equipped skoots.. I just serviced a GSXR750 @ about 17,000 mls with the original a/f and due to it's factory r/a system the a/f looked it looked like it had 5 coats of paint, rubber, sand and gunk. BUT the back side was clean and thats what matters.
Just a simple scoop may be a worthwhile improvement, I did one on the factory intake openings on the frame of my Chieftain and that brought in it's contribution of debris.
RACNRAY