1. The 69 has more power than the 60 and would beat a 60, but they are both powerful for their size, and the difference is not huge. Sure, in first or second, it would be hard to notice, because of how wild the acceleration is in those low gears, but by third you start noticing it.
2. Geometry (rake, trail, etc.) is why a bike is stable (stays upright). Even at higher speeds, gyroscopic forces are only 10 to 15% of the force on the front wheel. The rest is geometry (rake, trail, etc.). They have even created bikes that eliminate gyroscopic forces and they still stayed upright, due to geometry. Fundamentally, if a two wheel vehicle tends to turn into the direction it leans, then it is positively stable (self righting). The design is similar to what they do with planes to make them self return to level flight.
3. Rotational inertia is definitely a factor with regard to acceleration. It takes more energy to roll a 50 lb wheel up to 50 mph than it takes to carry it (not rolling) up to 50 mph.